:orphan:

Neighbors
=========



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    <div class="sphx-glr-thumbnails">

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    <div class="sphx-glr-thumbcontainer" tooltip="Example for the usage of the skmatter.neighbors.SparseKDE class. This class is specifically designed for conducting pobabilistic analysis of molecular motifs (PAMM), which is quite useful for analyzing motifs like H-bonds, coordination polyhedra, and protein secondary structure.">

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  .. image:: /examples/neighbors/images/thumb/sphx_glr_sparse-kde_thumb.png
    :alt:

  :ref:`sphx_glr_examples_neighbors_sparse-kde.py`

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      <div class="sphx-glr-thumbnail-title">Sparse KDE examples</div>
    </div>


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    <div class="sphx-glr-thumbcontainer" tooltip="Probabilistic analysis of molecular motifs (PAMM) is a method identifying molecular patterns based on an analysis of the probability distribution of fragments observed in an atomistic simulation. With the help of sparse KDE, it can be easily conducted.">

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  .. image:: /examples/neighbors/images/thumb/sphx_glr_pamm_thumb.png
    :alt:

  :ref:`sphx_glr_examples_neighbors_pamm.py`

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      <div class="sphx-glr-thumbnail-title">Probabilistic Analysis of Molecular Motifs (PAMM)</div>
    </div>


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    </div>


.. toctree::
   :hidden:

   /examples/neighbors/sparse-kde
   /examples/neighbors/pamm


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  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: neighbors_python.zip </examples/neighbors/neighbors_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: neighbors_jupyter.zip </examples/neighbors/neighbors_jupyter.zip>`


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 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_